pwm: atmel: Fix incorrect CDTY value after enabling

CUPD is not flushed before enabling the channel so it will update
CDTY/CPRD just after one period. So we always set CUPD, even when the
channel is not enabled.

Signed-off-by: Alexandre Belloni <alexandre.belloni@free-electrons.com>
Acked-by: Nicolas Ferre <nicolas.ferre@atmel.com>
Signed-off-by: Thierry Reding <thierry.reding@gmail.com>